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CGI 69 Var Genotypes – 1kG Comparison
The top plot is a variant map for the 69 Complete Genomics genomes zoomed in at chr19:1327958-1327975. The latest 1kG Phase1 set of variants (the first annotation track closest to the plot) is completely empty. However, the earliest Phase1 variant set clearly detected variants (the middle annotation track) that are also common variants in the Complete Genomic samples.