CGI 69 Var Genotypes – 1kG Comparison

The top plot is a variant map containing the 69 Complete Genomics genomes zoomed in at chr19:1327958-1327975. Each of the 4 variants are quite common in the 69 samples with allele frequencies around 30% (white space represents no variants for a given sample). The latest 1kG Phase1 set of variants (the first annotation track closest to the plot) is completely empty. However, the earliest Phase1 variant set clearly detected the variants (the middle annotation track). dbSNP 135 also has cataloged SNPs at two of these sites.

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