Analyzing a Single Sample Exome in VarSeq


While VarSeq comes with a number of starter workflows that are stored as templates, customers also have the option of creating filter chains from scratch; analyzing a single exome may require you to do exactly that. In this blog, I’ll go through analyzing a single exome and generating a list of variants for further study. After importing the variant data… Read more »

Reflection on ASHG 2015

      Andreas Scherer    October 14, 2015    No Comments on Reflection on ASHG 2015

ASHG 2015 in Baltimore was a very good conference for us at Golden Helix. It was a delight to connect with existing clients as well as interested members of our community. The conference is a premium networking opportunity for professionals in our field, with an ever increasing number of talks, demos and a constantly expanding vendor exhibition area.    … Read more »

Introduction to Sergey Kornilov

      Mary Makris    October 8, 2015    No Comments on Introduction to Sergey Kornilov
Sergey Blog

Our final webcast presentation in the series of winners from our Annual Abstract Challenge is first place recipient Dr. Sergey Kornilov. A Postdoctoral Associate in the Child Study Center at Yale University’s School of Medicine, Dr. Kornilov’s submission focused on the genetic basis of developmental language disorders in a geographically isolated Russian-speaking population. Next week on October 14th, he will… Read more »

Top Five Add-On Scripts for SVS

      Ashley Hintz    October 6, 2015    2 Comments on Top Five Add-On Scripts for SVS
top 5

While stand-alone SVS is an amazing statistical software package for genomics analysis, adding additional Python scripts to the program can expand SVS’s genomic analysis capabilities. In this post, I’ll take you through the most frequently downloaded Add-On Scripts for SVS and the top five were not what I expected! Coming in at Number Five is the script Convert Dosages to… Read more »

What to expect from ASHG 2015

      Andreas Scherer    September 29, 2015    2 Comments on What to expect from ASHG 2015

The 65th annual ASHG in Baltimore will be another exciting one. We at Golden Helix have been very busy this year making great improvements to both SVS and the VarSeq software and we look forward to showcasing them during our in booth demos. In particular, we will launch two new additions to the VarSeq software suite; VSReports and VSWarehouse. VSReports brings highly… Read more »

VSReports – Highlights from yesterday’s webcast


Yesterday, our VP of Product and Engineering, Gabe Rudy, presented VSReports to the Golden Helix community for the first time in a live webcast; Authoring Clinical Reports in VarSeq. It was an excellent presentation. Gabe highlighted VSReports’ ability to take the output of tertiary analysis to a customized clinical grade report in one click. He also gave an overview of… Read more »

Recent Customer Publications

      Mary Makris    September 22, 2015    No Comments on Recent Customer Publications
Customer Success Articles

This month we wanted to highlight four publications from a few of our valued customers. Congrats to all! Zuemei Ji and Christopher Amos of Dartmouth University published The Role of Haplotype in 15q25.1 Locus in Lung Cancer Risk: Results of Scanning chromosome 15 in the Oxford Journals which analyzed lung cancer patients and a control study to determine that rs588765-rs16969968 may… Read more »

Clinical Reporting comes to VarSeq

      Andreas Scherer    September 17, 2015    2 Comments on Clinical Reporting comes to VarSeq
Update to SVS

The next release of VarSeq will ship a new product that is highly relevant to our customers in clinical testing labs. Via VSReports, VarSeq now has the ability to generate clinical-grade reports. These reports are fully customizable, containing focused and actionable data. VS Reports ships with report templates that are modeled off of the ACMG guidelines, the de-facto gold standard… Read more »