Category Archives: How to’s and advanced workflows

New Tutorial: VSReports

      Darby Kammeraad    May 11, 2017    No Comments on New Tutorial: VSReports
cancer gene panel tutorial

The new VSReports tutorial covers a basic VSReports workflow with an emphasis on understanding and exploring report customizations. This tutorial requires an active VarSeq license with the the VSReport feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an evaluation license with the VSReports functionality included. VS Reports provides the ability to generate clinical-grade reports. This feature enables VarSeq… Read more »

New Tutorial: VSWarehouse

      Darby Kammeraad    April 27, 2017    No Comments on New Tutorial: VSWarehouse
cancer gene panel tutorial

The new VSWarehouse Tutorial covers the basic VSWarehouse workflow.This tutorial focuses on connecting to a VSWarehouse instance from VarSeq, adding an existing VSWarehouse project as an annotation source and using reports and assessment catalogs hosted on VSWarehouse. This workflow requires an active VarSeq license with the VSWarehouse feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an… Read more »

New Tutorial: VarSeq CNV Caller

cancer gene panel tutorial

The new VarSeq CNV Caller Tutorial covers the basics of the VarSeq CNV calling algorithm, with an emphasis on visualization and interpretation of results. This workflow requires an active VarSeq license with the CNV Caller on Target Regions feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an evaluation license with the CNV functionality included. The… Read more »

Adding RSIDs to your SVS marker mapped spreadsheet

VarSeq Updated

In the new Genotype Imputation tool that is coming soon to SVS, allele encoding is an important part of matching data between the target and the reference panels. If the same platform provider is being used, then A/B encoding can be used. However, it’s better to use the Reference/Alternate allele encoding associated with AGCT format to ensure accuracy. If an… Read more »

Utilizing VSReports in Your Clinical Workflow

Clinical labs need to be able to process samples down to a short list of variants and publish a professional report. VSReports helps scientists and clinicians alike create timely, actionable reports that can improve clinical decision making and streamline patient care by seamlessly incorporating the results of tertiary analysis into a customizable clinical report. To include the VSReports functionality in… Read more »