Author Archives: Steven Hystad

Steven Hystad

About Steven Hystad

Steve Hystad joined the Golden Helix development team in November of 2016 as a Field Application Scientist. Prior to that, Steve worked as a Regulatory Affairs Specialist and Molecular Biologist. Steve earned his Masters in Plant Genetics from Montana State University in 2014. As an FAS, Steve works on data curation, customer support and VSReports. When not working, Steve is skiing, hiking, rafting or searching for Forrest Fenn's treasure.

Frequently Asked Questions: CNV analysis in VarSeq

CNV FAQ

The support team at Golden Helix is always here to help with your SVS and VarSeq needs. Often, we receive some excellent questions that should be shared with the rest of our users. This blog will answer some common questions we’ve been seeing lately regarding VarSeq CNV. I’ve noticed there is a version 2 of the CNV caller on Targeted Regions Algorithm, how has… Read more »

New Tutorial: VSReports

      Steven Hystad    May 11, 2017    No Comments on New Tutorial: VSReports
cancer gene panel tutorial

The new VSReports tutorial covers a basic VSReports workflow with an emphasis on understanding and exploring report customizations. This tutorial requires an active VarSeq license with the the VSReport feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an evaluation license with the VSReports functionality included. VS Reports provides the ability to generate clinical-grade reports. This feature enables VarSeq… Read more »

New Tutorial: VSWarehouse

      Steven Hystad    April 27, 2017    No Comments on New Tutorial: VSWarehouse
cancer gene panel tutorial

The new VSWarehouse Tutorial covers the basic VSWarehouse workflow.This tutorial focuses on connecting to a VSWarehouse instance from VarSeq, adding an existing VSWarehouse project as an annotation source and using reports and assessment catalogs hosted on VSWarehouse. This workflow requires an active VarSeq license with the VSWarehouse feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an… Read more »

Coming Soon! The genome Aggregation Database (gnomAD)

SVS platform

Ever since the MacArther Lab announced the new gnomAD browser at last year’s ASHG conference, we have had many requests from our customers to make this new variant frequency source available within both VarSeq and SVS. This new dataset includes variants obtained from 123,136 exome sequences and 15,496 whole-genome sequences. In comparison to the original ExAC dataset which contained exomes… Read more »

New Tutorial: VarSeq CNV Caller

cancer gene panel tutorial

The new VarSeq CNV Caller Tutorial covers the basics of the VarSeq CNV calling algorithm, with an emphasis on visualization and interpretation of results. This workflow requires an active VarSeq license with the CNV Caller on Target Regions feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an evaluation license with the CNV functionality included. The… Read more »