Author Archives: Darby Kammeraad

Darby Kammeraad

About Darby Kammeraad

Darby Kammeraad is the Field Application Scientist Manager at Golden Helix, joining the team in April of 2017. Darby graduated in 2016 with a master’s degree in Plant Sciences from Montana State University, where he also received his bachelor’s degree in Plant Biotechnology. Darby works on customer support and training. When not in the office, Darby is learning how to play guitar, hunting, fishing, snowboarding, traveling or working on a new recipe in the kitchen.

Frequently Asked Questions: CNV analysis in VarSeq

CNV FAQ

The support team at Golden Helix is always here to help with your SVS and VarSeq needs. Often, we receive some excellent questions that should be shared with the rest of our users. This blog will answer some common questions we’ve been seeing lately regarding VarSeq CNV. I’ve noticed there is a version 2 of the CNV caller on Targeted Regions Algorithm, how has… Read more »

Cancer Gene Panels Tutorial

cancer gene panel tutorial

VarSeq enables breakthrough discoveries in cancer diagnostics by supporting gene panel testing and whole exome and genome analysis. We wanted to share our Cancer Gene Panel tutorial which covers a basic gene panel workflow with an emphasis on adding, modifying and manipulating filter chains. This tutorial will start with creating a new project from an empty project template, importing data, creating… Read more »

New Tutorial: VSReports

      Darby Kammeraad    May 11, 2017    No Comments on New Tutorial: VSReports
cancer gene panel tutorial

The new VSReports tutorial covers a basic VSReports workflow with an emphasis on understanding and exploring report customizations. This tutorial requires an active VarSeq license with the the VSReport feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an evaluation license with the VSReports functionality included. VS Reports provides the ability to generate clinical-grade reports. This feature enables VarSeq… Read more »

New Tutorial: VSWarehouse

      Darby Kammeraad    April 27, 2017    No Comments on New Tutorial: VSWarehouse
cancer gene panel tutorial

The new VSWarehouse Tutorial covers the basic VSWarehouse workflow.This tutorial focuses on connecting to a VSWarehouse instance from VarSeq, adding an existing VSWarehouse project as an annotation source and using reports and assessment catalogs hosted on VSWarehouse. This workflow requires an active VarSeq license with the VSWarehouse feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an… Read more »

By Popular Request: Our BEAGLE Algorithm Gains Support for Family Structure

family structure

Earlier this year we released our own optimized and integrated BEAGLE implementation for SVS based on the BEAGLE 4.1 and optionally 4.0 algorithms. One of the commonly requested features since that released was to expand the algorithm implementation to be considerate of the parent-offspring relationship between samples to inform and improve the accuracy of the haplotype phasing.  With this information,… Read more »