Category Archives: Add-on scripts & data repository

Nathan Fortier

New Plugin for Ion Torrent Server

Golden Helix is proud to announce the release of the Golden Helix GenomeBrowse Plugin for Ion Torrent server. The new plug-in enables adding selected BAM files from Torrent Server reports directly into GenomeBrowse. The BAM files remain on the torrent … Continue reading

Posted in Add-on scripts & data repository, Best practices in genetic analysis, Uncategorized | Tagged , , , | 1 Comment
Jami Bartole

Two New Regression Scripts

We are excited to let you know about two new scripts to aid in Numeric Regression analysis. Don’t forget about the Technical Support Bulletins which keep you up-to-date on all the latest script news. You can stream this feed via … Continue reading

Posted in Add-on scripts & data repository, News, events, & announcements | Tagged , , | Leave a comment
Greta Linse Peterson

Back to Basics: Importing/Exporting Data in Imputation Program Data Formats with SVS

In a recent blog post (Comparing BEAGLE, IMPUTE2, and Minimac Imputation Methods for Accuracy, Computation Time, and Memory Usage), Autumn Laughbaum compared three imputation programs. Data can be exported from, or imported into, SVS in the standard file formats for … Continue reading

Posted in Add-on scripts & data repository, Bioinformatic support, How to's and advanced workflows | 1 Comment
Greta Linse Peterson

Three New Scripts and Two Updated Ones

We are excited to let you know about new scripts to aid in filtering rows/columns and identifying unique values in a column, as well as two updated scripts. Don’t forget about the Technical Support Bulletins which keep you up-to-date on … Continue reading

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Greta Linse Peterson

New Plant and Animal Genomes and Tracks Now Available!

Happy new year! We hope all of our readers, clients, and users had a great holiday season filled with friends and family! While Golden Helix did take a break from blogging in December, we’ve still been pretty busy bringing you … Continue reading

Posted in Add-on scripts & data repository, Plant & animal | Leave a comment

Streamlined Workflow for Identifying Candidate Functional Polymorphisms

Since Dr. Ken Kaufman gave his webcast on Identifying Candidate Functional Polymorphisms in SVS, we’ve been working  with Dr. Kaufman to simplify and automate many of the steps in his workflow.  I touched on this in my last blog post, … Continue reading

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New Tools to Simplify the Workflow for Identifying Candidate Functional Polymorphisms in SVS

Dr. Ken Kaufman’s extremely popular webinar inspired us to build new tools that would simplify the process of analyzing whole-exome DNA sequencing data even further.  First I’ll describe the tools showcased in the webcast.  Then I’ll detail the new tools … Continue reading

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New Analysis and Spreadsheet Manipulation Tools in SVS!

The script development team at Golden Helix has been hard at work these past few months and this means several new and exciting tools for our SVS customers!  The scripts featured in this blog post vary in function, from expanding … Continue reading

Posted in Add-on scripts & data repository | 1 Comment

New Annotations and Maps Added to the Golden Helix Data Repository

The Golden Helix Data Repository hosts numerous annotation files, marker maps, and genome maps for a variety of species.  These downloadable files help clarify complex data and provide insight at the variant-, gene-, or whole-genome level.  Recently, we made several … Continue reading

Posted in Add-on scripts & data repository | 1 Comment

New Features in SVS: Accounting for Sex Chromosomes and Filter Columns by Variant Type

In the last couple of weeks, the SVS Script Repository has seen a handful of new additions.  This blog post highlights three new scripts, but as always, we welcome you to check out our repository regularly to enjoy the new … Continue reading

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